https://cs.indstate.edu/web/index.php?action=history&feed=atom&title=Bioinformatics 2026-04-05T15:13:15Z Revision history for this page on the wiki MediaWiki 1.44.0 https://cs.indstate.edu/web/index.php?title=Bioinformatics&diff=465&oldid=prev 2025-08-19T13:28:17Z

<p>Text replacement - &quot;cs.indstate.edu/wiki&quot; to &quot;cs.indstate.edu/web&quot;</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 13:28, 19 August 2025</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l297">Line 297:</td> <td colspan="2" class="diff-lineno">Line 297:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [https://indstate-edu.zoom.us/rec/play/IFMuCZHzVFO8VLgm_ltwUjLY0tG_te0gyfQHFkXksEAzh8xC08FhFraR9sJc-kv-GbiURPDBxiELud2G.GOFdI58_Gh6lzMlj watch this video introducing R].</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [https://indstate-edu.zoom.us/rec/play/IFMuCZHzVFO8VLgm_ltwUjLY0tG_te0gyfQHFkXksEAzh8xC08FhFraR9sJc-kv-GbiURPDBxiELud2G.GOFdI58_Gh6lzMlj watch this video introducing R].</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Look through [https://docs.google.com/presentation/d/1E1LSiWITG6iCqnmYeWi_CBSifQ_3dMVXxdpWsT30r4w Jeff&#039;s intro to R slides].</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Look through [https://docs.google.com/presentation/d/1E1LSiWITG6iCqnmYeWi_CBSifQ_3dMVXxdpWsT30r4w Jeff&#039;s intro to R slides].</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* Look through [https://cs.indstate.edu/<del style="font-weight: bold; text-decoration: none;">wiki</del>/index.php/R_Programming_-_Getting_Started R Getting Started].</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* Look through [https://cs.indstate.edu/<ins style="font-weight: bold; text-decoration: none;">web</ins>/index.php/R_Programming_-_Getting_Started R Getting Started].</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Pick another R tutorial or resource to start looking through (see the suggestions in R Getting Started, or ask the internet).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Pick another R tutorial or resource to start looking through (see the suggestions in R Getting Started, or ask the internet).</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Take R files from class, download them, try them out yourself. Files... [https://cs.indstate.edu/~jkinne/bioinformatics/R/gse85331_a.R gse85331_a.R] and [https://indstate-edu.zoom.us/rec/play/6FXvNrsK8pK9MboW-WfBjUXf7I-vy7EG7yI5LYg4enRCOC5e5PCUvoui_y9RGAKS6tQ5Xz2GmMSB4SOz.WG3UIiA2dhfkB0K_ video developing that file]. [https://cs.indstate.edu/~jkinne/bioinformatics/R/gse85331_b.R gse85331_b.R] and [https://indstate-edu.zoom.us/rec/play/jwbn6DxsUeGky_Op79OPjmdEmV40aZpG7Ojvob-dMeozjBOeUa3J3v81oAXQRMvIvARDs4pPAb8PKZfR.7vr1GWMY812yfoJv video developing that file]. [https://cs.indstate.edu/~jkinne/bioinformatics/R/GSE244362_lab3.R GSE244362_lab3.R] and the [https://indstate-edu.zoom.us/rec/play/rCNIUokP40Ro6s5S2aLCdD4RNXIWwF-VXkQzRx3GFCxsramj3CIAm090PxmebMVpDNjbOh7nmgQ-SpPF.-E9PFNCSfBaKJKEZ video] explaining what you are supposed to do in that lab.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Take R files from class, download them, try them out yourself. Files... [https://cs.indstate.edu/~jkinne/bioinformatics/R/gse85331_a.R gse85331_a.R] and [https://indstate-edu.zoom.us/rec/play/6FXvNrsK8pK9MboW-WfBjUXf7I-vy7EG7yI5LYg4enRCOC5e5PCUvoui_y9RGAKS6tQ5Xz2GmMSB4SOz.WG3UIiA2dhfkB0K_ video developing that file]. [https://cs.indstate.edu/~jkinne/bioinformatics/R/gse85331_b.R gse85331_b.R] and [https://indstate-edu.zoom.us/rec/play/jwbn6DxsUeGky_Op79OPjmdEmV40aZpG7Ojvob-dMeozjBOeUa3J3v81oAXQRMvIvARDs4pPAb8PKZfR.7vr1GWMY812yfoJv video developing that file]. [https://cs.indstate.edu/~jkinne/bioinformatics/R/GSE244362_lab3.R GSE244362_lab3.R] and the [https://indstate-edu.zoom.us/rec/play/rCNIUokP40Ro6s5S2aLCdD4RNXIWwF-VXkQzRx3GFCxsramj3CIAm090PxmebMVpDNjbOh7nmgQ-SpPF.-E9PFNCSfBaKJKEZ video] explaining what you are supposed to do in that lab.</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l342">Line 342:</td> <td colspan="2" class="diff-lineno">Line 342:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>In particular, your assigned reading includes...</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>In particular, your assigned reading includes...</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* From the R Programming Getting Started, start looking through each of the items linked in [https://cs.indstate.edu/<del style="font-weight: bold; text-decoration: none;">wiki</del>/index.php/R_Programming_-_Getting_Started#Reading Reading]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* From the R Programming Getting Started, start looking through each of the items linked in [https://cs.indstate.edu/<ins style="font-weight: bold; text-decoration: none;">web</ins>/index.php/R_Programming_-_Getting_Started#Reading Reading]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [https://bioboot.github.io/bggn213_f17/lectures/#17 UCSD lecture 17 - Transcriptomics and the analysis of RNA-Seq data]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [https://bioboot.github.io/bggn213_f17/lectures/#17 UCSD lecture 17 - Transcriptomics and the analysis of RNA-Seq data]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Up through Figure 1 in [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5576565/ Genome-Wide Temporal Profiling of Transcriptome and Open-Chromatin of Early Cardiomyocyte Differentiation Derived From hiPSCs and hESCs]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Up through Figure 1 in [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5576565/ Genome-Wide Temporal Profiling of Transcriptome and Open-Chromatin of Early Cardiomyocyte Differentiation Derived From hiPSCs and hESCs]</div></td></tr> </table>

Jkinne https://cs.indstate.edu/web/index.php?title=Bioinformatics&diff=17&oldid=prev 2025-08-17T13:22:10Z

<p>1 revision imported</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <tr class="diff-title" lang="en"> <td colspan="1" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="1" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 13:22, 17 August 2025</td> </tr><tr><td colspan="2" class="diff-notice" lang="en"><div class="mw-diff-empty">(No difference)</div> </td></tr></table>

Jkinne https://cs.indstate.edu/web/index.php?title=Bioinformatics&diff=16&oldid=prev 2024-07-10T17:35:58Z

<p><span class="autocomment">High Throughput Sequencing workflow</span></p> <a href="https://cs.indstate.edu/web/index.php?title=Bioinformatics&amp;diff=16">Show changes</a>

wiki_previous>Jkinne