Difference between revisions of "Bioinformatics"
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On your own computer, download https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE85331&format=file&file=GSE85331%5Fall%2Egene%2EFPKM%2Eoutput%2Ereplicates%2Etxt%2Egz | On your own computer, download https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE85331&format=file&file=GSE85331%5Fall%2Egene%2EFPKM%2Eoutput%2Ereplicates%2Etxt%2Egz | ||
and extract (uncompress) the file (on MacOS or Linux just double click it, on Windows use 7-Zip or something similar). | and extract (uncompress) the file (on MacOS or Linux just double click it, on Windows use 7-Zip or something similar). | ||
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| + | After extracting you can open the file in Excel, Sheets, or LibreOffice. Note that it is | ||
Revision as of 01:35, 20 January 2022
Additional Programs to Install
- Compression - for those using Windows, install 7-Zip. MacOS and Linux natively support most compression formats that we will need.
Gene Expression
We start by getting into the following dataset - https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE85331
On your own computer, download https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE85331&format=file&file=GSE85331%5Fall%2Egene%2EFPKM%2Eoutput%2Ereplicates%2Etxt%2Egz and extract (uncompress) the file (on MacOS or Linux just double click it, on Windows use 7-Zip or something similar).
After extracting you can open the file in Excel, Sheets, or LibreOffice. Note that it is
